The Black Fly arrives to the desolated city of Shinjuku in Japan, only to find the first wave of the alien invaders on Earth, which had taken control of the military weapons in the area, those who went down fighting were reanimated in an alien fashion, this twisted ghosts of the Earth's forces are thrown at the Black Fly along with the only positive glimpse of the alien invaders as the player/s fly towards the Tokyo Metropolitan Government Building.
The boss on this level is Apartheid.
- The Carrier-carrying Hermit Crab is a successor of Yamato from Darius II, a vestige of Metal Black's origins as Darius III.
- The desolated Shinjuku landscape seems to be the inspiration for Zone T in Darius Gaiden (Zone A in Darius Gaiden Extra Version).
- Apartheid is considered as a precursor of Crusty Hammer.